Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015852724.1_cds_XP_016511944.1_24634
CDS Infomation

[gene=LOC107829039] [db_xref=GeneID:107829039] [protein=lipoxygenase 6, chloroplastic-like isoform X2] [protein_id=XP_016511944.1] [location=join(288678..289032,290179..290456,290542..290779,290864..291190,291395..291480,291564..291671,291839..292140,292392..292658,292761..293295,293466..293690)] [gbkey=CDS]
Sequence

ATGATGCTTACAGCTCAATCAAGATCCACTGCACTCAGCTCAGAAATCCAACATGTCCTT
AAGGTCCGGGCACCGGAGATCATCACCGGCGGCCGGAGGAAATTGATGTCAAAAAGAAGT
ACATCACAAGTTAAAGCTGTGATCCAAAGTGGGAATAACAAAAAGACTACAAACTTGGTG
GAGAAATTGGTTTCTTCTGGCAAAAGTGGGAATCTTGATGTGAGAGCAGTGATCACTTTG
AGGAAGAAAATGAAGGAGAAAATCACAGACAAGATTGAAGATCAGTGGGAGTCTTTTATG
AATGGGATTGGAAGGGGAATCTTGATTCAGCTCATTAGTGAAGACATTGATCCTGTTACC
AAGTCGGGAAAGATTGCGGAATCTTATGTGCGAGGTTGGTTGTCCAAGCCTTCTGACCAT
CCATATATAGTTGAATATGCTGCCAATTTCAGAGTACCACGCGATTTTGGACGTCCTGGA
GCTATCATTATTACCAATTTCCTTGACAAAGAGATACACTTAGTGCAGATTGTTGTTCAT
AACTTTAATGAAGGCCCTATATTCTTTAGTGCTAATACATGGATTCATTCTCGAAAAGAT
AATCCAGAGAGTAGAATTATCTTCCAAAATCAGGCATATCTACCATCTGAAACACCACCT
GGCATCAAGGATCTTCGACGTGAAGACTTGTTGATCATTCGTGGAACTGGGAAAGGCGAG
AGGAAGCTACATGAACGAATCTATGATTATGATGTTTATAATGATTTAGGAAATCCCGAC
AAAAGTGAGGATCTTGCTAGGCCACTGATAGGTGGCAAAGAGAGACCTTATCCTAGGCGT
TGTCGGACTGGTAGAAGTCCAACTAAAACAGATCCACTAGCAGAGAGTCGAATAGAGAAA
CCTCATCCAGTTTATGTCCCTAGAGACGAAACTTTTGAAGAAATTAAGCAAAATACTTTT
TCTGCTGGAAGGTTGAAAGCTCTGTTACATAACCTGGTACCACTAATTGCTGCCACACTG
TCAAGCTCAGACATTCCCTTCACAAACTTCTCCGACATAGATAAACTCTATAACGATGGG
TTTGAATTGAACGATGATGAACATTCACAGAAGAATAAATTTCTTTCTGATACTTTGGAT
AAAGTATTTTCTGTCAGCAAAAGGTTGCTCAAATATGAGATTCCTGCTATAATCAAACGG
GATAGATTTGCTTGGTTGCGAGATAATGAGTTTGCGCGACAAGCTTTAGCAGGGGTTAAC
CCTGTGAATATTGAACTTTTGAGGGAATTTCCAATTGTTAGCAAACTAGATCCAGCTGTT
TATGGCCCCCCTGATTCAGCTATTACCAGGGATCTTATAGAACAAGAGCTTAATGGACTG
ACTGTTGAAGAGGCAATTGAAGACAAGAGATTGTTTATACTTGATTATCATGACATGCTT
TTGCCATTTATCGGGAAGATGAACAACTTGCCAGGGAGGAAAGCTTATGCATCAAGAACA
CTTCTCTTCCACACATCCAGAGGTGTTCTAAAGCCGATTATCGTTGAACTTTCACTGCCT
CCAACACCTTCTTCACCTAGGAACAAGCGTATATTCACCCATGGACATGATTCAACCAGT
CACTGGATCTGGAATCTAGCCAAAGCACATGTTTGTTCAAATGATGCTGGCATTCATCAG
TTGGTGAACCACTGGTTAAGGACTCATGCTTGTATGGAACCGTATATCATTGCAACCCAT
AGGCATCTTAGCTCTATGCACCCAATTTACAAGCTACTTCACCCACATATGCGCTACACA
CTGGAAATCAATGCGCTTGCGAGGCAGAGTTTGATAAACGGGGGTGGAGTTATTGAAGCA
TGTTTTAGCCCCGGAAGATATTCAATGGAAATAAGCTCTGCAGCTTACAAGAGCATGTGG
CGGTTTGATATGGAAGCTCTGCCTTCAGATTTAATAAGAAGGGGAATGGCCGTGGAGGAT
CCATCAATGCCTTTGGGGGTGAAACTTGTGATTGAAGACTACCCTTATGCAGCAGACGGC
CTTCTCATATGGTCTGCCATAAAAGAATATGTGGAGTCGTATGTTGAGCACTACTATTCC
GAGCCTAATTCTGTCACTTCAGATGTTGAGCTCCAAGGGTGGTGGAATGAGATCAAGAGC
AAGGGACACCCTGACAAGAAAGATGAGCCTTGGTGGCCAAAGCTTGTTACTAAAGAAGAC
TTGTCTGGCATACTCACCATAATGATTTGGATTGCCTCAGGCCAACATGCAGCAATAAAC
TTTGGGCAGTACCCTTTTGGAGGTTATGTACCTAACCGTCCTACCCTTATGCGAAAGCTC
ATCCCACGTGAAGATGATCCCAGCTATGAGAACTTTATTCTTCACCCTGAGTTCACTTTT
CTGGCATCTTTGCCTACTCAACTCCAAGCTACTAAAGTGATGGCTGTTCAAGATACCTTG
TCGACTCATTCAGCAGATGAGGAATACTTGCATCAGGTGCACGAACTTCAAAGATTCTCC
GTAAATGATCATGAAGTTTTGAGGATTTCTGAAAGATTCTGTGCCAAATTAGAGGAGGTA
GAACACACCATCAACCAAAGAAACAAGGATAATCGTCTTAAAAACCGAAGTGGTGCTGGC
ATTCCTCCATATGAACTGCTGCTACCTACTTCTGGTCCGGGTGTTACCTGTCGTGGTATT
CCCAACAGCATCTCTATCTGA

Peptide Sequence

PEP ID

XP_016511944.1
PEP Infomation

PREDICTED: lipoxygenase 6, chloroplastic-like isoform X2 [Nicotiana tabacum]
Sequence

MMLTAQSRSTALSSEIQHVLKVRAPEIITGGRRKLMSKRSTSQVKAVIQSGNNKKTTNLV
EKLVSSGKSGNLDVRAVITLRKKMKEKITDKIEDQWESFMNGIGRGILIQLISEDIDPVT
KSGKIAESYVRGWLSKPSDHPYIVEYAANFRVPRDFGRPGAIIITNFLDKEIHLVQIVVH
NFNEGPIFFSANTWIHSRKDNPESRIIFQNQAYLPSETPPGIKDLRREDLLIIRGTGKGE
RKLHERIYDYDVYNDLGNPDKSEDLARPLIGGKERPYPRRCRTGRSPTKTDPLAESRIEK
PHPVYVPRDETFEEIKQNTFSAGRLKALLHNLVPLIAATLSSSDIPFTNFSDIDKLYNDG
FELNDDEHSQKNKFLSDTLDKVFSVSKRLLKYEIPAIIKRDRFAWLRDNEFARQALAGVN
PVNIELLREFPIVSKLDPAVYGPPDSAITRDLIEQELNGLTVEEAIEDKRLFILDYHDML
LPFIGKMNNLPGRKAYASRTLLFHTSRGVLKPIIVELSLPPTPSSPRNKRIFTHGHDSTS
HWIWNLAKAHVCSNDAGIHQLVNHWLRTHACMEPYIIATHRHLSSMHPIYKLLHPHMRYT
LEINALARQSLINGGGVIEACFSPGRYSMEISSAAYKSMWRFDMEALPSDLIRRGMAVED
PSMPLGVKLVIEDYPYAADGLLIWSAIKEYVESYVEHYYSEPNSVTSDVELQGWWNEIKS
KGHPDKKDEPWWPKLVTKEDLSGILTIMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKL
IPREDDPSYENFILHPEFTFLASLPTQLQATKVMAVQDTLSTHSADEEYLHQVHELQRFS
VNDHEVLRISERFCAKLEEVEHTINQRNKDNRLKNRSGAGIPPYELLLPTSGPGVTCRGI
PNSISI

Transcript Sequence

Gene sequence data has not been registered.